PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G210000.2
Common NameB456_013G210000, LOC105783743
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 234aa    MW: 26382.5 Da    PI: 8.6728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G210000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002485109123
                         EEETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                         + C+ C+k ++  +++++H+++  H
  Gorai.013G210000.2  85 FYCELCNKQYKLAMEFEVHLSSydH 109
                         79*****************987666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF015851.4E-8131IPR000467G-patch domain
SMARTSM004430.0025133IPR000467G-patch domain
PROSITE profilePS5017413.057135IPR000467G-patch domain
SuperFamilySSF576675.0E-571113No hitNo description
PfamPF121711.4E-585112IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028087109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGWKGKGLGK DEQGIIEPIR SGIRDPKLGI GKQEEDDFFT AEENIQRRKL DIEVEETEEH  60
AKKREVLAER EQKIQTEVKE IRKVFYCELC NKQYKLAMEF EVHLSSYDHN HRKRFKEMRE  120
MHGSSSRDDR QKREQQRQER EMAKFAQMAG ARKQQQQESR EESGPATAPA SSPAPAPAPA  180
PAIATALADQ EQRKTLKFGF SSKSSSSKNA SGSAVKKPKV AVASVFGNDS DDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464822.11e-171PREDICTED: G patch domain-containing protein 8
TrEMBLA0A0D2VI881e-172A0A0D2VI88_G
TrEMBLA0A0D2W8261e-171A0A0D2W826_G
STRINGVIT_14s0060g00320.t011e-124(Vitis vinifera)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]